Incoprea Research Testing the notebook · 30 October 2026

Networks

The claim that fragmentation under node loss is predicted by cut-vertex density rather than by size or redundancy, tested on nine SNAP networks up to 1.7 million nodes.

Is mesh resilience set by articulation points?

Hypothesis 46, Volume X · Networks · verdict: Refuted

This is a working test of someone else's published proposal. It is not peer reviewed, it is not medical or financial advice, and it does not establish that the proposal is true. Read the limits section before quoting the result.

Verdict: refuted. Across nine networks, articulation-point density does not predict fragmentation under node loss in the direction claimed. The controlled coefficient is negative, the simple association is nil, and the pre-specified bypass edge rule bought ten times less resilience than random edges. One post-hoc corrected rule supports the mechanism and is labelled as post-hoc.

Result

A 2% random node loss leaves 2.4% to 23.0% of nodes outside the largest component (F = 0.0242 on as-skitter to 0.2300 on ca-GrQc). Fitting F on standardised kappa/n, log10 n and m/n across the nine graphs (n = 9, 5 residual degrees of freedom, R² = 0.678) gives b1 = −0.2381, a 10,000-label two-sided permutation p = 0.0280, partial R² = 0.552. The sign is negative: more articulation points per node went with less fragmentation, the opposite of the prediction. A two-test Benjamini–Hochberg family gives q = 0.028 for this coefficient and q = 0.0001 for the edge test.

The simple association is weaker: Spearman rho +0.117 for kappa/n, against −0.217 for log10 n and −0.250 for m/n — the worst of the three, where P1 says it should be best.

Two features explain the instability. kappa/n and m/n are nearly the same variable (r = −0.958): sparse road and peer-to-peer graphs (kappa/n 0.15–0.19, m/n 1.4–3.7) sit against dense web and internet graphs (0.058–0.066, m/n 6.5–7.1). And F at 2% includes pre-existing fragmentation — ca-GrQc starts at 0.207, web-Stanford at 0.095. Subtracting that baseline flips b1 to +0.0055 (p = 0.097, partial R² = 0.339).

Design

Nine SNAP networks, all SHA-256 checked: ca-GrQc (n = 5,242), p2p-Gnutella06, -04, -24 and -30 (8,717 to 36,682), web-Stanford (281,903), roadNet-PA (1,088,092), roadNet-TX (1,379,917) and as-skitter (1,696,415). All are unordered pair lists; roadNet-PA/TX list every edge twice and web-Stanford has 319,861 duplicate lines, removed before analysis. The largest has 11,095,298 distinct edges, held as arrays.

For each graph: exact articulation points by iterative Tarjan (813 on ca-GrQc to 259,525 on roadNet-TX), components, redundancy, and F = 1 − S_max/n after removing 0.5, 1, 2 and 5% of nodes over 20 seeds. Attacks were random, highest-degree, and a degree × two-hop-degree proxy (a cheap stand-in for betweenness, not betweenness). The confirmatory point is f = 2%, random attack.

P1 — kappa/n predicts better than n or m/n: not supported

Univariate R² is 0.047 for kappa/n, 0.098 for log10 n and 0.014 for m/n; |rho| is 0.117, 0.217 and 0.250. kappa/n beats m/n in R² but loses to node count on both measures and to m/n on rank correlation. In the joint model its partial R² is largest (0.552), but that is shared variance: two-predictor models explain 0.126–0.211, while adding kappa last lifts R² from 0.126 to 0.678. A predictor that only works beside its near-duplicate is not shown better.

P2 — the association survives controlling for size and redundancy: not supported

It survives arithmetically (p = 0.028) but not in the claimed direction and not robustly. Leave-one-out: dropping ca-GrQc gives −0.023 (p = 0.860), dropping web-Stanford gives p = 0.072, and the other seven leave b1 between −0.225 and −0.287. With degree-attack F, b1 = −0.240 (p = 0.271); at f = 5% it is −0.235 (p = 0.033). The sign is stable and negative; significance is not.

P3 — articulation-bypassing edges beat random edges: refuted as pre-specified

The pre-registered rule connected the highest-degree nodes of the two largest biconnected blocks at each cut vertex. Those are usually one giant block and one tiny leaf, so it protected little: mean reduction in F was 0.000552 against 0.005575 for 50 random edges (ratio 0.099, p = 0.00005 over 20,000 permutations; paired sign-flip p = 0.00005). The ratio is 0.093 on ca-GrQc and 0.872 on p2p-Gnutella06.

Random edges win largely by welding ca-GrQc's many small components onto the giant one, lowering F without strengthening it. A post-hoc rule connecting the highest-degree nodes in the two largest components of G − a — the regions a cut vertex really separates — and confining both strategies to the giant component, reverses the result: 0.000805 against 0.000251, ratio 3.21, p = 0.00285. That supports the mechanism but is post-hoc and cannot rescue the pre-specified test.

What the test cannot see

Nine graphs are a convenience sample, with 5 residual degrees of freedom. kappa/n and m/n are collinear by construction, so no analysis of these nine can say which matters. F is static and structural: it sees the largest component, not function, traffic or recovery, and removals are uniform or rank-based rather than cascading. The edge experiment uses the two smallest graphs, one fragmented and one connected, so its pooled answer is dominated by ca-GrQc. Observational throughout: associations, not causes.

What would change the answer

A sample with independent variation in kappa/n at fixed m/n — matched pairs, or synthetic graphs with articulation density dialled independently — would test P1 properly. A baseline-adjusted response and at least ten graphs would make P2 estimable. The post-hoc region rule should be pre-registered and replicated on more than two graphs before P3's mechanism is believed.

Files and disclosure

hypothesis.md is the pre-registration; run.py reruns everything from the network and writes results.json, data/ and figures/. SOURCE.md records URLs, timestamps, hashes, row counts and field discovery. Designed and executed with AI assistance (DeepSeek, via its coding agent); not peer reviewed.

Figures

Articulation density against fragmentation after removing 2% of nodes at random. Nine points, two clusters, and no positive relation.
Articulation density against fragmentation after removing 2% of nodes at random. Nine points, two clusters, and no positive relation.
Fragmentation under random, degree-ranked, and cut-vertex-ranked attack, by network.
Fragmentation under random, degree-ranked, and cut-vertex-ranked attack, by network.
Effect of adding fifty edges by each strategy. The pre-specified bypass rule did ten times worse than random edges.
Effect of adding fifty edges by each strategy. The pre-specified bypass rule did ten times worse than random edges.